PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775978.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 220aa    MW: 25191 Da    PI: 4.7648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1888138255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+++AeIrd + ng   r+++g+f++ae Aa a+++a+ +++g
  XP_009775978.1  88 NYRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDSAEAAALAYDQAAFAMRG 138
                     59*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-2087147No hitNo description
PfamPF008473.3E-1388138IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2288148IPR016177DNA-binding domain
PROSITE profilePS5103222.65588146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2988147IPR001471AP2/ERF domain
SMARTSM003806.6E-3688152IPR001471AP2/ERF domain
PRINTSPR003677.3E-1089100IPR001471AP2/ERF domain
PRINTSPR003677.3E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDSSFMHYQN PYDQNYSPQS SSWDELLFHH DSLPFNVNDT EDMFLFNLVA EGDRTVVKES  60
SAETINSSSS SGTKEEEVTS CEPEEEKNYR GVRKRPWGKF AAEIRDSTRN GVRVWIGTFD  120
SAEAAALAYD QAAFAMRGSL AILNFPVEIV KESLSEMKCR FDEGCSPVIE LKKRHSMRKK  180
TQRRRNRVVR KDESNVVVFE DLGAEYLEEL LSSSECVTNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2987149163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775978.11e-165PREDICTED: ethylene-responsive transcription factor 1B
RefseqXP_016511764.11e-165PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-69ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLK4CUR17e-99K4CUR1_SOLLC; Uncharacterized protein
STRINGSolyc09g066360.1.12e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-49ethylene response factor 1